PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.8KG293600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 102aa    MW: 11141.3 Da    PI: 9.4866
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.8KG293600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-0627681454
                         HHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                  HLH 14 driNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54
                         d+i + +++L+ l P+ ++++++++ s a +L+ ++ YI+sL
  Pavir.8KG293600.1.p 27 DQISELLSRLQALRPEsQTRNGARRDSAARVLQDTCSYIRSL 68
                         6899************777999999***************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.5561368IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-62786IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-62787IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 102 aa     Download sequence    Send to blast
MSSSRRSRTR RAGSSLSSSS SRSISEDQIS ELLSRLQALR PESQTRNGAR RDSAARVLQD  60
TCSYIRSLHQ EVDNLSETLA ELLSSVDVTS DQAAIIRSLL M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0965981e-89FP096598.1 Phyllostachys edulis cDNA clone: bphyst010g20, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002448623.12e-42hypothetical protein SORBIDRAFT_06g030340
SwissprotA2XY471e-41ILI1_ORYSI; Transcription factor ILI1
SwissprotQ7X7421e-41ILI1_ORYSJ; Transcription factor ILI1
TrEMBLC5Y8Z32e-42C5Y8Z3_SORBI; Putative uncharacterized protein Sb06g030340
STRINGSb06g030340.17e-42(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122932837
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.18e-23bHLH family protein